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aobd2009

Participants (liste non définitive, finalisation prévue pour le 30/09)

  • Bordeaux: Virginie, Daniel
  • Lyon: Hubert, Stephano
  • Montpellier: Cecile
  • Rennes: Jean Pierre
  • Sophia: Emeline, Etienne
  • Toulouse: Sebastien, Jerome, Manu, Erika
  • Versailles: Eric

URLs utiles

Propositions pour le nom du projet

* BiOS: Bioinformatique Orientée Services ←— Selection

* SOA-BIOINF / SOABi / SOAB : Service Oriented Architecture in Bioinformatics

* ArchBiOS / ArcBiOS / ABiOS : Architecture Bioinformatique Orientée Services

* PFBiOS / PBiOS: Plateforme Bioinformatique Orientée Services

* XPressDB / XpressPortal

* DGEA-DB: Digital Gene Expression Analysis

Version soumise le 09 octobre 2008

References a creuser

* The implemented mRNA seq method uses the statistics described by Mortazavi A, et.al, “Mapping and quantifying mammalian transcriptomes by RNA-Seq”, Nat Methods. 2008 Jul;5(7):585-7.

* Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys Edward Susko 1,* and Andrew J. Roger 2 (2004) http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2279

* A novel method of differential gene expression analysis using multiple cDNA libraries applied to the identification of tumour endothelial genes John MJ Herbert1 email, Dov Stekel2 email, Sharon Sanderson3 email, Victoria L Heath1 email and Roy Bicknell1,3 BMC Genomics 2008, 9:153doi:10.1186/1471-2164-9-153 http://www.biomedcentral.com/1471-2164/9/153

* Genome Res. 2000 Jul;10(7):1051-60. SAGEmap: a public gene expression resource.

* RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays1. John C. Marioni1,6,2. Christopher E. Mason2,3,6,3. Shrikant M. Mane4,4. Matthew Stephens1,5,7, and5. Yoav Gilad1,7 Genome research 2009.

* Quality Assessment and Data Analysis for microRNA Expression Arrays D. Sarkar1,*, R. Parkin1, S. Wyman1, A. Bendoraite1, C. Sather1, J. Delrow1, A. K. Godwin2, C. Drescher1, W. Huber3, R. Gentleman1 and M. Tewari1 Nucleic Acids Research, 2009, Vol. 37, No. 2 e17

aobd2009.txt · Last modified: 2009/02/01 11:31 by gouzy